PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG553200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 273aa    MW: 29590.1 Da    PI: 6.4025
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG553200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.4e-053786154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r++ + erE+  Rd++N+ f eL  +l  +     + + Ka iL+ +++ +++L
  Pavir.9NG553200.1.p 37 RKVHKAEREKLKRDHLNDLFIELGNMLEAD----RQNNGKACILTDTTRILRDL 86
                         677889*********************997....57788888988888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.4933686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1036105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-836105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.79E-43791No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVPSERGSVA TAVSTAAADK LVHGPITGKK CKKAAPRKVH KAEREKLKRD HLNDLFIELG  60
NMLEADRQNN GKACILTDTT RILRDLLVQV ESLRKEHSNL QNETHYVAIE RNELQDENGV  120
LRKEISELQD ELRMRTSGNP AGWGHGTAGS NPSVPNPASA VFSSQQAMQP PTVASTIFPM  180
QQPLAPSAVI EQSYATPPPL ELKLFPGAAS VDVCETSEDQ EAPNHVARPQ ARYPTQSASW  240
PVTLFSGLPR MEDEQCSSST TSSSKEASTG RD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.116180.0callus| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984211.11e-169PREDICTED: transcription factor bHLH47-like
TrEMBLK4ADQ91e-169K4ADQ9_SETIT; Uncharacterized protein
STRINGSi037016m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-28bHLH family protein